# Biobb CMIP changelog

## What's new in version [5.2.3](https://github.com/bioexcel/biobb_amber/releases/tag/v5.2.3)?

### Changes

* [UPDATE] Update to biobb_common 5.2.2

## What's new in version [5.2.2](https://github.com/bioexcel/biobb_amber/releases/tag/v5.2.2)?

### Changes

* [UPDATE] Update to biobb_common 5.2.1

## What's new in version [5.2.1](https://github.com/bioexcel/biobb_amber/releases/tag/v5.2.1)?

### Changes

* [UPDATE] Minor bug fixes in CmipRun

## What's new in version [5.2.0](https://github.com/bioexcel/biobb_amber/releases/tag/v5.2.0)?

### Changes

* [UPDATE] Update to biobb_common 5.2.0

## What's new in version [5.1.0](https://github.com/bioexcel/biobb_cmip/releases/tag/v5.1.0)?

### Changes

* [UPDATE] * Update to biobb_common 5.1.0 (general)

## What's new in version [5.0.0](https://github.com/bioexcel/biobb_cmip/releases/tag/v5.0.0)?

### Changes

* [FEATURE] New sandbox_path property


## What's new in version [4.2.0](https://github.com/bioexcel/biobb_cmip/releases/tag/v4.2.0)?
In version 4.2.0 the dependency biobb_common has been updated to 4.2.0 version.

### New features

* Update to biobb_common 4.2.0 (general)

## What's new in version [4.1.1](https://github.com/bioexcel/biobb_cmip/releases/tag/4.1.1)?
Fixed command line paths.

## What's new in version [4.1.0](https://github.com/bioexcel/biobb_cmip/releases/tag/v4.1.0)?
In version 4.1.0 the dependency biobb_common has been updated to 4.1.0 version.

### New features

* Update to biobb_common 4.1.0 (general)

## What's new in version [4.0.0](https://github.com/bioexcel/biobb_cmip/releases/tag/4.0.0)?
All inputs/outputs are now checked.

## What's new in version [3.9.0](https://github.com/bioexcel/biobb_cmip/releases/tag/3.9.0)?
All operations are now sandboxed

## What's new in version [3.7.8](https://github.com/bioexcel/biobb_cmip/releases/tag/3.7.8)?
Adding compatibility with json box.

### New features
* Adding json box.

## What's new in version [3.7.6](https://github.com/bioexcel/biobb_cmip/releases/tag/3.7.6)?
Bug fixes in Titration and MIP.

### Bug fixes

* Adding default for energy_cutoff option.
* Removing hardcoded Box from configuration.
* Adding quotes to OW probe names.

## What's new in version [3.7.5](https://github.com/bioexcel/biobb_cmip/releases/tag/3.7.5)?
New module prepare_pdb.

### New features

* New module prepare_pdb.

### Bug fixes

### Other changes

## What's new in version [3.7.3](https://github.com/bioexcel/biobb_cmip/releases/tag/3.7.3)?
Replace pytraj dependency by mdanalysis.

### New features

* Replace pytraj dependency by mdanalysis.

### Bug fixes

### Other changes

## What's new in version [3.7.2](https://github.com/bioexcel/biobb_cmip/releases/tag/3.7.2)?
In version 3.7.2 the modules have been adapted to use biobb_common 3.7.0
and a new module prepare_structure has been added.

### New features

* New biobb_cmip 3.7.2 (general) compatible with biobb_common 3.7.0
* New module prepare_structure to convert standard PDB files to CMIP prepared PDB files.

### Bug fixes

### Other changes


## What's new in version [3.6.0](https://github.com/bioexcel/biobb_cmip/releases/tag/3.6.0)?
In version 3.6.0 ...

### New features

* New biobb_cmip 3.6 (general)

### Bug fixes

* Replace container Quay.io badge (documentation)

### Other changes